Methanomethylophilus sp001481295
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Archaea; p__Thermoplasmatota; c__Thermoplasmata; o__Methanomassiliicoccales; f__Methanomethylophilaceae; g__Methanomethylophilus; s__Methanomethylophilus sp001481295
Filtered NCBI Taxonomy d__Archaea; p__Euryarchaeota; c__Thermoplasmata; o__Methanomassiliicoccales; f__Candidatus Methanomethylophilaceae; g__Candidatus Methanomethylophilus; s__
Unfiltered NCBI Taxonomy d__Archaea; p__Euryarchaeota; x__Diaforarchaea group; c__Thermoplasmata; o__Methanomassiliicoccales; f__Candidatus Methanomethylophilaceae; g__Candidatus Methanomethylophilus; s__Candidatus Methanomethylophilus sp. 1R26
NCBI Strain Identifiers 1R26
GTDB Type Material Designation not type material
GTDB Representative of Species True (4 genomes in species cluster)
Genome Characteristics
CheckM Completeness 93.73%
CheckM Contamination 0.81%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 50
N50 Contigs 64,482 bp
Longest Contig 113,139 bp
Scaffold Count 50
N50 Scaffolds 64,482 bp
Longest Scaffold 113,139 bp
Genome Size 1,723,106 bp
Protein Count 2,079
Coding Density 87.46%
GC Percentage 60.39%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM148129v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04326629
Country Denmark
Date 2015-12-22
Genbank Assembly Accession GCA_001481295.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source enrichment culture inoculated with rumen contents from Bos taurus grown on RM02 media supplemented with sodium acetate; sodium formate; trimethylamine; methanol and yeast extract.
Latitude Longitude 56.4877773 N 9.588020000000029 E
Molecule Count N/A
CDS Count 1,760
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 1769296
SSU Count 1
Submitter Aarhus University
Taxid 1769296
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOPS00000000.1