Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-
NCBI Strain Identifiers CVM N42518
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 8
tRNA Count 20
Contig Count 132
N50 Contigs 90,782 bp
Longest Contig 387,436 bp
Scaffold Count 132
N50 Scaffolds 90,782 bp
Longest Scaffold 387,436 bp
Genome Size 5,160,870 bp
Protein Count 4,908
Coding Density 87.50%
GC Percentage 51.89%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Salmonella enterica CVM N42518-SQ v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02699363
Country USA: MD
Date 2015-12-22
Genbank Assembly Accession GCA_001481235.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Chicken Breast
Latitude Longitude None
Molecule Count N/A
CDS Count 5,194
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 28901
SSU Count 2
Submitter FDA
Taxid 1620419
Total Gap Length 0
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JZAH00000000.1