Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Dublin
NCBI Strain Identifiers CVM N42502
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.71%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 55
N50 Contigs 327,381 bp
Longest Contig 421,013 bp
Scaffold Count 55
N50 Scaffolds 327,381 bp
Longest Scaffold 421,013 bp
Genome Size 4,956,090 bp
Protein Count 4,810
Coding Density 87.56%
GC Percentage 52.09%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Salmonella enterica CVM N42502 v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02699359
Country USA: NY
Date 2015-12-22
Genbank Assembly Accession GCA_001481195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Ground Beef
Latitude Longitude None
Molecule Count N/A
CDS Count 5,050
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 28901
SSU Count 1
Submitter FDA
Taxid 98360
Total Gap Length 0
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JZAD00000000.1