Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Agona
NCBI Strain Identifiers CVM N42469
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.85%
CheckM Contamination 0.3%
CheckM Strain Heterogeneity 25.0
5S Count 6
16S Count 3
23S Count 2
tRNA Count 19
Contig Count 91
N50 Contigs 149,004 bp
Longest Contig 365,204 bp
Scaffold Count 91
N50 Scaffolds 149,004 bp
Longest Scaffold 365,204 bp
Genome Size 4,920,099 bp
Protein Count 4,664
Coding Density 87.69%
GC Percentage 51.97%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Salmonella enterica CVM N42469 v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02699349
Country USA: CT
Date 2015-12-22
Genbank Assembly Accession GCA_001480635.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Ground Turkey
Latitude Longitude None
Molecule Count N/A
CDS Count 4,959
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 28901
SSU Count 3
Submitter FDA
Taxid 58095
Total Gap Length 0
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYZT00000000.1