Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium
NCBI Strain Identifiers CVM N38921
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 6
tRNA Count 20
Contig Count 129
N50 Contigs 105,246 bp
Longest Contig 707,665 bp
Scaffold Count 129
N50 Scaffolds 105,246 bp
Longest Scaffold 707,665 bp
Genome Size 5,051,136 bp
Protein Count 4,820
Coding Density 87.65%
GC Percentage 52.08%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Salmonella enterica CVM N38921-SQ v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02699303
Country USA: PA
Date 2015-12-22
Genbank Assembly Accession GCA_001480085.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Chicken Breast
Latitude Longitude None
Molecule Count N/A
CDS Count 5,139
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 28901
SSU Count 2
Submitter FDA
Taxid 90371
Total Gap Length 0
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYXY00000000.1