Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar London
NCBI Strain Identifiers CVM N38882
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.15%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 104
N50 Contigs 133,487 bp
Longest Contig 611,386 bp
Scaffold Count 104
N50 Scaffolds 133,487 bp
Longest Scaffold 611,386 bp
Genome Size 4,878,864 bp
Protein Count 4,612
Coding Density 87.65%
GC Percentage 51.84%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Salmonella enterica CVM N38882-SQ v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02699292
Country USA: MD
Date 2015-12-22
Genbank Assembly Accession GCA_001479935.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Pork Chop
Latitude Longitude None
Molecule Count N/A
CDS Count 4,888
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 28901
SSU Count 2
Submitter FDA
Taxid 149390
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYXN00000000.1