Salmonella arizonae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella arizonae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. arizonae; x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:-
NCBI Strain Identifiers CVM N29355
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000018625.1)
Genome Characteristics
CheckM Completeness 99.85%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 5
tRNA Count 19
Contig Count 93
N50 Contigs 135,376 bp
Longest Contig 395,665 bp
Scaffold Count 93
N50 Scaffolds 135,376 bp
Longest Scaffold 395,665 bp
Genome Size 4,487,605 bp
Protein Count 4,235
Coding Density 86.85%
GC Percentage 51.50%
Ambiguous Bases N/A
GTDB representative GCA_000018625.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Salmonella enterica CVM N29355-SQ v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02699200
Country USA: CA
Date 2015-12-22
Genbank Assembly Accession GCA_001478655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Ground Turkey
Latitude Longitude None
Molecule Count N/A
CDS Count 4,429
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 28901
SSU Count 3
Submitter FDA
Taxid 1192839
Total Gap Length 0
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYTZ00000000.1