Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Typhimurium; x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-
NCBI Strain Identifiers CVM N29343
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.28%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 8
tRNA Count 20
Contig Count 94
N50 Contigs 193,697 bp
Longest Contig 431,680 bp
Scaffold Count 94
N50 Scaffolds 193,697 bp
Longest Scaffold 431,680 bp
Genome Size 5,011,909 bp
Protein Count 4,763
Coding Density 87.69%
GC Percentage 52.11%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Salmonella enterica CVM N29343-SQ v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02699197
Country USA: NY
Date 2015-12-22
Genbank Assembly Accession GCA_001478625.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Chicken Breast
Latitude Longitude None
Molecule Count N/A
CDS Count 5,061
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 28901
SSU Count 2
Submitter FDA
Taxid 1620419
Total Gap Length 0
Translation Table 11
tRNA Count (total) 78
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYTW00000000.1