Sphingomonas yabuuchiae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas yabuuchiae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas yabuuchiae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas yabuuchiae
NCBI Strain Identifiers NS355
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.14%
CheckM Contamination 0.94%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 190
N50 Contigs 45,578 bp
Longest Contig 347,399 bp
Scaffold Count 190
N50 Scaffolds 45,578 bp
Longest Scaffold 347,399 bp
Genome Size 3,909,164 bp
Protein Count 3,629
Coding Density 89.60%
GC Percentage 65.98%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM147749v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03401385
Country India
Date 2015-12-22
Genbank Assembly Accession GCA_001477495.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,587
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 172044
SSU Count 1
Submitter Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India
Taxid 172044
Total Gap Length 0
Translation Table 11
tRNA Count (total) 49
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDTF00000000.1