Pseudomonas_B oryzihabitans
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_B; s__Pseudomonas_B oryzihabitans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas psychrotolerans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas psychrotolerans
NCBI Strain Identifiers NS337
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000730625.1)
Genome Characteristics
CheckM Completeness 99.2%
CheckM Contamination 0.64%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 192
N50 Contigs 118,956 bp
Longest Contig 293,183 bp
Scaffold Count 192
N50 Scaffolds 118,956 bp
Longest Scaffold 293,183 bp
Genome Size 4,837,497 bp
Protein Count 4,583
Coding Density 89.89%
GC Percentage 65.92%
Ambiguous Bases N/A
GTDB representative GCA_000730625.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM147747v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03401420
Country India
Date 2015-12-22
Genbank Assembly Accession GCA_001477475.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,524
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 237610
SSU Count 2
Submitter Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India
Taxid 237610
Total Gap Length 0
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDSR00000000.1