Pseudomonas_E parafulva_B
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E parafulva_B
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas parafulva
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas parafulva
NCBI Strain Identifiers NS96
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002021815.1)
Genome Characteristics
CheckM Completeness 99.9%
CheckM Contamination 0.51%
CheckM Strain Heterogeneity 60.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 162
N50 Contigs 108,451 bp
Longest Contig 266,207 bp
Scaffold Count 162
N50 Scaffolds 108,451 bp
Longest Scaffold 266,207 bp
Genome Size 4,671,094 bp
Protein Count 4,307
Coding Density 89.73%
GC Percentage 61.87%
Ambiguous Bases N/A
GTDB representative GCA_002021815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM147742v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03401429
Country India
Date 2015-12-22
Genbank Assembly Accession GCA_001477425.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,266
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 157782
SSU Count 1
Submitter Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India
Taxid 157782
Total Gap Length 0
Translation Table 11
tRNA Count (total) 64
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDSN00000000.1