Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Pantoea; s__Pantoea stewartii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea stewartii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Erwiniaceae; g__Pantoea; s__Pantoea stewartii
NCBI Strain Identifiers RSA13
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000757405.1)
Genome Characteristics
CheckM Completeness 99.34%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 48
N50 Contigs 167,513 bp
Longest Contig 523,610 bp
Scaffold Count 48
N50 Scaffolds 167,513 bp
Longest Scaffold 523,610 bp
Genome Size 4,766,500 bp
Protein Count 4,422
Coding Density 86.38%
GC Percentage 53.67%
Ambiguous Bases N/A
GTDB representative GCA_000757405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM147721v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03401414
Country India
Date 2015-12-22
Genbank Assembly Accession GCA_001477215.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,397
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 66269
SSU Count 1
Submitter Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India
Taxid 66269
Total Gap Length 0
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDSI00000000.1