Sphingomonas endophytica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas endophytica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas endophytica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingomonas; s__Sphingomonas endophytica
NCBI Strain Identifiers NS334
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 97.79%
CheckM Contamination 3.22%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 330
N50 Contigs 58,696 bp
Longest Contig 204,088 bp
Scaffold Count 330
N50 Scaffolds 58,696 bp
Longest Scaffold 204,088 bp
Genome Size 3,641,654 bp
Protein Count 3,591
Coding Density 90.35%
GC Percentage 67.81%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM147689v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03401386
Country India
Date 2015-12-22
Genbank Assembly Accession GCA_001476895.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,506
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 869719
SSU Count 1
Submitter Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India
Taxid 869719
Total Gap Length 0
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDTB00000000.1