Pseudomonas_B psychrotolerans_A
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_B; s__Pseudomonas_B psychrotolerans_A
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas psychrotolerans
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas psychrotolerans
NCBI Strain Identifiers SB11
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001913135.1)
Genome Characteristics
CheckM Completeness 97.29%
CheckM Contamination 0.89%
CheckM Strain Heterogeneity 40.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 232
N50 Contigs 134,485 bp
Longest Contig 386,743 bp
Scaffold Count 232
N50 Scaffolds 134,485 bp
Longest Scaffold 386,743 bp
Genome Size 5,202,116 bp
Protein Count 4,857
Coding Density 89.00%
GC Percentage 64.84%
Ambiguous Bases N/A
GTDB representative GCA_001913135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM147685v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03401427
Country India
Date 2015-12-22
Genbank Assembly Accession GCA_001476855.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,816
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 237610
SSU Count 1
Submitter Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India
Taxid 237610
Total Gap Length 0
Translation Table 11
tRNA Count (total) 59
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDSV00000000.1