Staphylococcus epidermidis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
NCBI Strain Identifiers SA6
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_006742205.1)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 33.33
5S Count 6
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 66
N50 Contigs 227,679 bp
Longest Contig 391,005 bp
Scaffold Count 66
N50 Scaffolds 227,679 bp
Longest Scaffold 391,005 bp
Genome Size 2,540,147 bp
Protein Count 2,391
Coding Density 83.19%
GC Percentage 32.06%
Ambiguous Bases N/A
GTDB representative GCA_006742205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM147651v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03401364
Country India
Date 2015-12-22
Genbank Assembly Accession GCA_001476515.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,487
Refseq Category na
Seq Rel Date 2015/12/22
Spanned Gaps 0
Species Taxid 1282
SSU Count 1
Submitter Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India
Taxid 1282
Total Gap Length 0
Translation Table 11
tRNA Count (total) 62
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LDTG00000000.1