Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
NCBI Strain Identifiers CVM 43820
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.15%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 175
N50 Contigs 66,360 bp
Longest Contig 213,838 bp
Scaffold Count 175
N50 Scaffolds 66,360 bp
Longest Scaffold 213,838 bp
Genome Size 4,969,272 bp
Protein Count 4,756
Coding Density 87.70%
GC Percentage 52.21%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Salmonella enterica CVM 43820 v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02911989
Country USA
Date 2015-12-21
Genbank Assembly Accession GCA_001475225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical sample
Latitude Longitude None
Molecule Count N/A
CDS Count 5,076
Refseq Category na
Seq Rel Date 2015/12/21
Spanned Gaps 0
Species Taxid 28901
SSU Count 3
Submitter FDA
Taxid 28901
Total Gap Length 0
Translation Table 11
tRNA Count (total) 76
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYSL00000000.1