Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
NCBI Strain Identifiers CVM 43792
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 99.85%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 82
N50 Contigs 233,353 bp
Longest Contig 489,356 bp
Scaffold Count 82
N50 Scaffolds 233,353 bp
Longest Scaffold 489,356 bp
Genome Size 4,939,578 bp
Protein Count 4,721
Coding Density 87.82%
GC Percentage 52.16%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Salmonella enterica CVM 43792 v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02911961
Country USA
Date 2015-12-21
Genbank Assembly Accession GCA_001474605.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical sample
Latitude Longitude None
Molecule Count N/A
CDS Count 5,031
Refseq Category na
Seq Rel Date 2015/12/21
Spanned Gaps 0
Species Taxid 28901
SSU Count 2
Submitter FDA
Taxid 28901
Total Gap Length 0
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYRJ00000000.1