Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
NCBI Strain Identifiers CVM 43782
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 4
tRNA Count 19
Contig Count 72
N50 Contigs 302,626 bp
Longest Contig 891,842 bp
Scaffold Count 72
N50 Scaffolds 302,626 bp
Longest Scaffold 891,842 bp
Genome Size 4,784,974 bp
Protein Count 4,532
Coding Density 87.72%
GC Percentage 51.97%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name Salmonella enterica CVM 43782 v1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02911951
Country USA
Date 2015-12-21
Genbank Assembly Accession GCA_001474505.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source clinical sample
Latitude Longitude None
Molecule Count N/A
CDS Count 4,844
Refseq Category na
Seq Rel Date 2015/12/21
Spanned Gaps 0
Species Taxid 28901
SSU Count 2
Submitter FDA
Taxid 28901
Total Gap Length 0
Translation Table 11
tRNA Count (total) 71
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JYQZ00000000.1