Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers FDAARGOS_103
GTDB Type Material Designation not type material
GTDB Representative of Species True (1,038 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.35%
CheckM Strain Heterogeneity 50.0
5S Count 7
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 2
N50 Contigs 2,902,028 bp
Longest Contig 2,902,028 bp
Scaffold Count 2
N50 Scaffolds 2,902,028 bp
Longest Scaffold 2,902,028 bp
Genome Size 4,036,048 bp
Protein Count 3,565
Coding Density 86.77%
GC Percentage 47.58%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM147158v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03996320
Country Germany
Date 2018-01-19
Genbank Assembly Accession GCA_001471585.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Fish from river
Latitude Longitude None
Molecule Count N/A
CDS Count 3,668
Refseq Category na
Seq Rel Date 2018/01/19
Spanned Gaps 0
Species Taxid 666
SSU Count 7
Submitter University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Taxid 666
Total Gap Length 0
Translation Table 11
tRNA Count (total) 98
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LOSL00000000.2