Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio harveyi
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio harveyi
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; x__Vibrio harveyi group; s__Vibrio harveyi
NCBI Strain Identifiers FDAARGOS_109
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001591145.1)
Genome Characteristics
CheckM Completeness 99.73%
CheckM Contamination 1.88%
CheckM Strain Heterogeneity 68.42
5S Count 12
16S Count 12
23S Count 12
tRNA Count 20
Contig Count 2
N50 Contigs 3,540,268 bp
Longest Contig 3,540,268 bp
Scaffold Count 2
N50 Scaffolds 3,540,268 bp
Longest Scaffold 3,540,268 bp
Genome Size 5,758,394 bp
Protein Count 5,107
Coding Density 85.61%
GC Percentage 44.98%
Ambiguous Bases N/A
GTDB representative GCA_001591145.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM147157v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03996325
Country USA: MA
Date 2018-01-19
Genbank Assembly Accession GCA_001471575.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Dead amphipod
Latitude Longitude None
Molecule Count N/A
CDS Count 5,304
Refseq Category na
Seq Rel Date 2018/01/19
Spanned Gaps 0
Species Taxid 669
SSU Count 12
Submitter University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Taxid 669
Total Gap Length 0
Translation Table 11
tRNA Count (total) 133
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master LOSK00000000.2