Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio cholerae
NCBI Strain Identifiers ATCC 11629
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001471585.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.08%
CheckM Strain Heterogeneity 50.0
5S Count 9
16S Count 9
23S Count 9
tRNA Count 20
Contig Count 7
N50 Contigs 2,604,894 bp
Longest Contig 2,604,894 bp
Scaffold Count 7
N50 Scaffolds 2,604,894 bp
Longest Scaffold 2,604,894 bp
Genome Size 4,216,088 bp
Protein Count 3,874
Coding Density 86.13%
GC Percentage 47.50%
Ambiguous Bases N/A
GTDB representative GCA_001471585.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM147145v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03996319
Country None
Date 2018-01-19
Genbank Assembly Accession GCA_001471455.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,017
Refseq Category na
Seq Rel Date 2018/01/19
Spanned Gaps 0
Species Taxid 666
SSU Count 9
Submitter University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Taxid 666
Total Gap Length 0
Translation Table 11
tRNA Count (total) 100
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOSM00000000.2