Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Vibrionaceae; g__Vibrio; s__Vibrio mimicus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio mimicus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Vibrionales; f__Vibrionaceae; g__Vibrio; s__Vibrio mimicus
NCBI Strain Identifiers FDAARGOS_113
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000338875.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.34%
CheckM Strain Heterogeneity 0.0
5S Count 10
16S Count 10
23S Count 10
tRNA Count 20
Contig Count 2
N50 Contigs 3,051,225 bp
Longest Contig 3,051,225 bp
Scaffold Count 2
N50 Scaffolds 3,051,225 bp
Longest Scaffold 3,051,225 bp
Genome Size 4,432,093 bp
Protein Count 3,964
Coding Density 87.09%
GC Percentage 46.19%
Ambiguous Bases N/A
GTDB representative GCA_000338875.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM147139v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03996329
Country USA: TN
Date 2018-01-19
Genbank Assembly Accession GCA_001471395.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,108
Refseq Category na
Seq Rel Date 2018/01/19
Spanned Gaps 0
Species Taxid 674
SSU Count 10
Submitter University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center
Taxid 674
Total Gap Length 0
Translation Table 11
tRNA Count (total) 105
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOSJ00000000.2