Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas aeruginosa group; s__Pseudomonas aeruginosa
NCBI Strain Identifiers AATYA
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 135
N50 Contigs 171,911 bp
Longest Contig 720,085 bp
Scaffold Count 135
N50 Scaffolds 171,911 bp
Longest Scaffold 720,085 bp
Genome Size 7,103,193 bp
Protein Count 6,664
Coding Density 89.08%
GC Percentage 65.80%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146969v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03455934
Country USA
Date 2015-12-18
Genbank Assembly Accession GCA_001469695.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude 38.984652 N 77.094709 W
Molecule Count N/A
CDS Count 6,867
Refseq Category na
Seq Rel Date 2015/12/18
Spanned Gaps 0
Species Taxid 287
SSU Count 1
Submitter NHGRI
Taxid 287
Total Gap Length 0
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LODN00000000.1