Xylella fastidiosa
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xylella; s__Xylella fastidiosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xylella; s__Xylella fastidiosa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xylella; s__Xylella fastidiosa; sb__Xylella fastidiosa subsp. pauca
NCBI Strain Identifiers CFBP8072
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000767565.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 279
N50 Contigs 87,332 bp
Longest Contig 224,836 bp
Scaffold Count 278
N50 Scaffolds 87,332 bp
Longest Scaffold 224,836 bp
Genome Size 2,496,662 bp
Protein Count 2,588
Coding Density 81.72%
GC Percentage 51.94%
Ambiguous Bases 78
GTDB representative GCA_000767565.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name XYFPCFBP8072
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04075656
Country France
Date 2015-12-18
Genbank Assembly Accession GCA_001469345.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,450
Refseq Category na
Seq Rel Date 2015/12/18
Spanned Gaps 1
Species Taxid 2371
SSU Count 2
Submitter INRA
Taxid 698414
Total Gap Length 31
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKDK00000000.1