Pseudoalteromonas sp001468485
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Alteromonadaceae; g__Pseudoalteromonas; s__Pseudoalteromonas sp001468485
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Pseudoalteromonadaceae; g__Pseudoalteromonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Alteromonadales; f__Pseudoalteromonadaceae; g__Pseudoalteromonas; s__Pseudoalteromonas sp. 10-33
NCBI Strain Identifiers 10-33
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001468485.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.84%
CheckM Strain Heterogeneity 16.67
5S Count 1
16S Count 4
23S Count 10
tRNA Count 20
Contig Count 36
N50 Contigs 178,718 bp
Longest Contig 734,926 bp
Scaffold Count 29
N50 Scaffolds 288,160 bp
Longest Scaffold 734,926 bp
Genome Size 4,201,303 bp
Protein Count 3,699
Coding Density 87.79%
GC Percentage 39.69%
Ambiguous Bases N/A
GTDB representative GCA_001468485.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM146919v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04293677
Country North Sea: offshore island Helgoland; station Kabeltonne
Date 2015-12-17
Genbank Assembly Accession GCA_001469195.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source water
Latitude Longitude 54.18416 N 7.9 E
Molecule Count N/A
CDS Count 3,692
Refseq Category na
Seq Rel Date 2015/12/17
Spanned Gaps 7
Species Taxid 1761890
SSU Count 5
Submitter University of Arizona
Taxid 1761890
Total Gap Length 37303
Translation Table 11
tRNA Count (total) 99
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LOFI00000000.1