Thiohalocapsa sp001469165
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Chromatiales; f__Chromatiaceae; g__Thiohalocapsa; s__Thiohalocapsa sp001469165
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Chromatiales; f__Chromatiaceae; g__Thiohalocapsa; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Chromatiales; f__Chromatiaceae; g__Thiohalocapsa; s__Thiohalocapsa sp. ML1
NCBI Strain Identifiers ML1
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 98.6%
CheckM Contamination 1.45%
CheckM Strain Heterogeneity 11.11
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 137
N50 Contigs 114,369 bp
Longest Contig 332,978 bp
Scaffold Count 137
N50 Scaffolds 114,369 bp
Longest Scaffold 332,978 bp
Genome Size 6,305,354 bp
Protein Count 5,545
Coding Density 83.95%
GC Percentage 68.31%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ML-1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02422661
Country Canada: British Columbia; Mahoney Lake
Date 2015-12-17
Genbank Assembly Accession GCA_001469165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source water
Latitude Longitude 49.283333 N 119.583333 W
Molecule Count N/A
CDS Count 5,453
Refseq Category na
Seq Rel Date 2015/12/17
Spanned Gaps 0
Species Taxid 1431688
SSU Count 1
Submitter The Pennsylvania State University
Taxid 1431688
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JABX00000000.1