Lacticaseibacillus paracasei
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lacticaseibacillus; s__Lacticaseibacillus paracasei
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus paracasei
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; x__Lactobacillus casei group; s__Lactobacillus paracasei
NCBI Strain Identifiers DPC6800
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000829035.1)
Genome Characteristics
CheckM Completeness 99.29%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 5
23S Count 2
tRNA Count 20
Contig Count 58
N50 Contigs 98,006 bp
Longest Contig 595,092 bp
Scaffold Count 58
N50 Scaffolds 98,006 bp
Longest Scaffold 595,092 bp
Genome Size 3,053,365 bp
Protein Count 3,169
Coding Density 85.02%
GC Percentage 46.41%
Ambiguous Bases 149
GTDB representative GCA_000829035.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146911v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03840869
Country Ireland
Date 2015-12-17
Genbank Assembly Accession GCA_001469115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Cheese
Latitude Longitude None
Molecule Count N/A
CDS Count 3,276
Refseq Category na
Seq Rel Date 2015/12/17
Spanned Gaps 0
Species Taxid 1597
SSU Count 5
Submitter Teagasc, Moorepark
Taxid 1597
Total Gap Length 0
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNQD00000000.1