Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis
NCBI Strain Identifiers UM-CSF05
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 149
N50 Contigs 91,928 bp
Longest Contig 203,665 bp
Scaffold Count 138
N50 Scaffolds 95,960 bp
Longest Scaffold 203,665 bp
Genome Size 4,338,921 bp
Protein Count 4,103
Coding Density 90.40%
GC Percentage 65.58%
Ambiguous Bases 47
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM146854v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04159257
Country Malaysia
Date 2015-12-15
Genbank Assembly Accession GCA_001468545.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cerebrospinal fluid
Latitude Longitude None
Molecule Count N/A
CDS Count 4,239
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 11
Species Taxid 1773
SSU Count 1
Submitter University of Malaya
Taxid 1773
Total Gap Length 467
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LLXG00000000.1