Sphingopyxis sp001468465
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingopyxis; s__Sphingopyxis sp001468465
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingopyxis; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingopyxis; s__Sphingopyxis sp. H115
NCBI Strain Identifiers H115
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.98%
CheckM Contamination 1.24%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 63
N50 Contigs 115,198 bp
Longest Contig 341,030 bp
Scaffold Count 63
N50 Scaffolds 115,198 bp
Longest Scaffold 341,030 bp
Genome Size 4,493,891 bp
Protein Count 4,314
Coding Density 90.89%
GC Percentage 64.33%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146846v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04256113
Country USA: Cincinnati; Ohio
Date 2015-12-15
Genbank Assembly Accession GCA_001468465.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Drinking Water
Latitude Longitude None
Molecule Count N/A
CDS Count 4,281
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 0
Species Taxid 1759073
SSU Count 1
Submitter US EPA
Taxid 1759073
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNSA00000000.1