Sphingopyxis sp001468395
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingopyxis; s__Sphingopyxis sp001468395
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingopyxis; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingopyxis; s__Sphingopyxis sp. H100
NCBI Strain Identifiers H100
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001468395.1)
Genome Characteristics
CheckM Completeness 99.3%
CheckM Contamination 0.31%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 52
N50 Contigs 193,174 bp
Longest Contig 551,681 bp
Scaffold Count 52
N50 Scaffolds 193,174 bp
Longest Scaffold 551,681 bp
Genome Size 4,306,674 bp
Protein Count 4,211
Coding Density 90.14%
GC Percentage 64.84%
Ambiguous Bases N/A
GTDB representative GCA_001468395.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146842v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04256162
Country USA: Cincinnati; Ohio
Date 2015-12-15
Genbank Assembly Accession GCA_001468425.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Drinking Water
Latitude Longitude None
Molecule Count N/A
CDS Count 4,200
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 0
Species Taxid 1759081
SSU Count 1
Submitter US EPA
Taxid 1759081
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNSI00000000.1