Sphingopyxis sp001468285
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingopyxis; s__Sphingopyxis sp001468285
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingopyxis; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingopyxis; s__Sphingopyxis sp. HXXIV
NCBI Strain Identifiers HXXIV
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001468285.1)
Genome Characteristics
CheckM Completeness 99.64%
CheckM Contamination 2.1%
CheckM Strain Heterogeneity 23.08
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 141
N50 Contigs 60,013 bp
Longest Contig 199,918 bp
Scaffold Count 141
N50 Scaffolds 60,013 bp
Longest Scaffold 199,918 bp
Genome Size 4,885,113 bp
Protein Count 4,605
Coding Density 91.11%
GC Percentage 66.70%
Ambiguous Bases N/A
GTDB representative GCA_001468285.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146830v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04256144
Country USA: Cincinnati; Ohio
Date 2015-12-15
Genbank Assembly Accession GCA_001468305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Drinking Water
Latitude Longitude None
Molecule Count N/A
CDS Count 4,552
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 0
Species Taxid 1759075
SSU Count 1
Submitter US EPA
Taxid 1759075
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNSC00000000.1