Sphingopyxis sp001468225
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingopyxis; s__Sphingopyxis sp001468225
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingopyxis; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingopyxis; s__Sphingopyxis sp. H038
NCBI Strain Identifiers H038
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001468225.1)
Genome Characteristics
CheckM Completeness 99.64%
CheckM Contamination 2.01%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 34
N50 Contigs 241,205 bp
Longest Contig 750,643 bp
Scaffold Count 34
N50 Scaffolds 241,205 bp
Longest Scaffold 750,643 bp
Genome Size 5,058,140 bp
Protein Count 4,759
Coding Density 90.76%
GC Percentage 64.70%
Ambiguous Bases N/A
GTDB representative GCA_001468225.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146740v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04252879
Country USA: Cincinnati; Ohio
Date 2015-12-15
Genbank Assembly Accession GCA_001467405.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Drinking Water
Latitude Longitude None
Molecule Count N/A
CDS Count 4,738
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 0
Species Taxid 1759066
SSU Count 1
Submitter US EPA
Taxid 1759066
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNRT00000000.1