Pseudomonas_E syringae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E syringae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae ICMP 11168
NCBI Strain Identifiers ICMP 11168
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000507185.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 98
N50 Contigs 135,412 bp
Longest Contig 393,655 bp
Scaffold Count 97
N50 Scaffolds 135,412 bp
Longest Scaffold 393,655 bp
Genome Size 5,966,977 bp
Protein Count 5,183
Coding Density 88.75%
GC Percentage 59.13%
Ambiguous Bases 65
GTDB representative GCA_000507185.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM146728v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04102817
Country New Zealand
Date 2015-12-15
Genbank Assembly Accession GCA_001467285.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,327
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 1
Species Taxid 317
SSU Count 2
Submitter New Zealand Institute for Plant & Food research
Taxid 1198308
Total Gap Length 27
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKGV00000000.1