Pseudomonas_E sp002723595
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E sp002723595
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas marginalis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas marginalis; x__Pseudomonas marginalis ICMP 9505
NCBI Strain Identifiers ICMP 9505
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002723595.1)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 146
N50 Contigs 90,711 bp
Longest Contig 392,880 bp
Scaffold Count 144
N50 Scaffolds 90,711 bp
Longest Scaffold 392,880 bp
Genome Size 5,893,550 bp
Protein Count 5,367
Coding Density 88.61%
GC Percentage 59.57%
Ambiguous Bases 90
GTDB representative GCA_002723595.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM146726v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04102814
Country New Zealand
Date 2015-12-15
Genbank Assembly Accession GCA_001467265.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,350
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 2
Species Taxid 298
SSU Count 2
Submitter New Zealand Institute for Plant & Food research
Taxid 1198317
Total Gap Length 47
Translation Table 11
tRNA Count (total) 62
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKGY00000000.1