Pseudomonas_E avellanae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E avellanae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae group pathovars incertae sedis; x__Pseudomonas syringae pv. actinidiae; x__Pseudomonas syringae pv. actinidiae ICMP 19497
NCBI Strain Identifiers ICMP 19497
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000444135.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.67%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 234
N50 Contigs 68,548 bp
Longest Contig 275,075 bp
Scaffold Count 233
N50 Scaffolds 68,548 bp
Longest Scaffold 275,075 bp
Genome Size 6,315,702 bp
Protein Count 5,645
Coding Density 87.91%
GC Percentage 58.64%
Ambiguous Bases 109
GTDB representative GCA_000444135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM146722v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04092567
Country None
Date 2015-12-15
Genbank Assembly Accession GCA_001467225.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,878
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 1
Species Taxid 317
SSU Count 1
Submitter New Zealand Institute for Plant & Food research
Taxid 1208099
Total Gap Length 23
Translation Table 11
tRNA Count (total) 60
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKBQ00000000.1