Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae ICMP 19499
NCBI Strain Identifiers ICMP 19499
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.22%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 4
23S Count 1
tRNA Count 20
Contig Count 103
N50 Contigs 180,439 bp
Longest Contig 445,246 bp
Scaffold Count 102
N50 Scaffolds 180,439 bp
Longest Scaffold 445,246 bp
Genome Size 6,162,306 bp
Protein Count 5,483
Coding Density 88.78%
GC Percentage 58.28%
Ambiguous Bases 76
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM146711v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04092560
Country New Zealand
Date 2015-12-15
Genbank Assembly Accession GCA_001467115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source kiwi fruit
Latitude Longitude None
Molecule Count N/A
CDS Count 5,645
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 1
Species Taxid 317
SSU Count 4
Submitter New Zealand Institute for Plant & Food research
Taxid 1208101
Total Gap Length 13
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKCI00000000.1