Pseudomonas_E amygdali
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E amygdali
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae ICMP 19498
NCBI Strain Identifiers ICMP 19498
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001400815.1)
Genome Characteristics
CheckM Completeness 99.84%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 161
N50 Contigs 113,425 bp
Longest Contig 366,337 bp
Scaffold Count 161
N50 Scaffolds 113,425 bp
Longest Scaffold 366,337 bp
Genome Size 6,037,605 bp
Protein Count 5,370
Coding Density 88.70%
GC Percentage 58.38%
Ambiguous Bases 73
GTDB representative GCA_001400815.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146710v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04092435
Country New Zealand
Date 2015-12-15
Genbank Assembly Accession GCA_001467105.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source kiwi fruit
Latitude Longitude None
Molecule Count N/A
CDS Count 5,535
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 0
Species Taxid 317
SSU Count 1
Submitter New Zealand Institute for Plant & Food research
Taxid 1208100
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKCH00000000.1