Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli NCCP 15655
NCBI Strain Identifiers NCCP 15655
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 7
23S Count 7
tRNA Count 20
Contig Count 5
N50 Contigs 1,892,096 bp
Longest Contig 2,252,129 bp
Scaffold Count 5
N50 Scaffolds 1,892,096 bp
Longest Scaffold 2,252,129 bp
Genome Size 4,965,708 bp
Protein Count 4,678
Coding Density 87.79%
GC Percentage 50.86%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146700v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02729950
Country South Korea
Date 2015-12-15
Genbank Assembly Accession GCA_001467005.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces of a female patient with diarrhea
Latitude Longitude None
Molecule Count N/A
CDS Count 5,060
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter Yonsei University
Taxid 1330529
Total Gap Length 0
Translation Table 11
tRNA Count (total) 96
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATLW00000000.1