Pseudomonas_E syringae_Q
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E syringae_Q
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae pv. syringae; x__Pseudomonas syringae pv. syringae PD2766
NCBI Strain Identifiers PD2766
GTDB Type Material Designation not type material
GTDB Representative of Species True (3 genomes in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.6%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 105
N50 Contigs 133,143 bp
Longest Contig 482,177 bp
Scaffold Count 105
N50 Scaffolds 133,143 bp
Longest Scaffold 482,177 bp
Genome Size 5,469,082 bp
Protein Count 4,837
Coding Density 88.65%
GC Percentage 59.00%
Ambiguous Bases 71
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146696v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04102822
Country None
Date 2015-12-15
Genbank Assembly Accession GCA_001466965.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,000
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 0
Species Taxid 317
SSU Count 2
Submitter New Zealand Institute for Plant & Food research
Taxid 716918
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKEM00000000.1