Pseudomonas_E azotoformans
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E azotoformans
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas fluorescens
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas fluorescens group; s__Pseudomonas fluorescens
NCBI Strain Identifiers ICMP3636
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900103345.1)
Genome Characteristics
CheckM Completeness 99.93%
CheckM Contamination 0.29%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 102
N50 Contigs 144,381 bp
Longest Contig 377,916 bp
Scaffold Count 101
N50 Scaffolds 144,381 bp
Longest Scaffold 377,916 bp
Genome Size 6,591,031 bp
Protein Count 5,969
Coding Density 90.00%
GC Percentage 60.93%
Ambiguous Bases 76
GTDB representative GCA_900103345.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM146691v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04102827
Country New Zealand
Date 2015-12-15
Genbank Assembly Accession GCA_001466915.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,003
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 1
Species Taxid 294
SSU Count 0
Submitter New Zealand Institute for Plant & Food research
Taxid 294
Total Gap Length 16
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKEI00000000.1