Pseudomonas_E syringae_M
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas_E; s__Pseudomonas_E syringae_M
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas syringae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; x__Pseudomonas syringae group; x__Pseudomonas syringae group genomosp. 1; s__Pseudomonas syringae; x__Pseudomonas syringae pv. syringae; x__Pseudomonas syringae pv. syringae PD2774
NCBI Strain Identifiers PD2774
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002905995.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.48%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 183
N50 Contigs 75,729 bp
Longest Contig 311,946 bp
Scaffold Count 180
N50 Scaffolds 75,729 bp
Longest Scaffold 311,946 bp
Genome Size 6,357,389 bp
Protein Count 5,636
Coding Density 87.95%
GC Percentage 59.17%
Ambiguous Bases 184
GTDB representative GCA_002905995.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM146687v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04102823
Country None
Date 2015-12-15
Genbank Assembly Accession GCA_001466875.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,780
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 3
Species Taxid 317
SSU Count 1
Submitter New Zealand Institute for Plant & Food research
Taxid 716919
Total Gap Length 56
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LKEL00000000.1