Escherichia coli_D
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli NCCP 15653
NCBI Strain Identifiers NCCP 15653
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.64%
CheckM Strain Heterogeneity 20.0
5S Count 6
16S Count 7
23S Count 7
tRNA Count 19
Contig Count 43
N50 Contigs 242,877 bp
Longest Contig 620,172 bp
Scaffold Count 43
N50 Scaffolds 242,877 bp
Longest Scaffold 620,172 bp
Genome Size 5,361,872 bp
Protein Count 5,032
Coding Density 87.58%
GC Percentage 50.56%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146675v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02729951
Country None
Date 2015-12-15
Genbank Assembly Accession GCA_001466755.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,482
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 0
Species Taxid 562
SSU Count 7
Submitter Yonsei University
Taxid 1330530
Total Gap Length 0
Translation Table 11
tRNA Count (total) 73
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ATLY00000000.1