Xanthomonas oryzae
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas oryzae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas oryzae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Xanthomonadales; f__Xanthomonadaceae; g__Xanthomonas; s__Xanthomonas oryzae; x__Xanthomonas oryzae pv. oryzae
NCBI Strain Identifiers AXO1947
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_004136375.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 1
N50 Contigs 4,674,975 bp
Longest Contig 4,674,975 bp
Scaffold Count 1
N50 Scaffolds 4,674,975 bp
Longest Scaffold 4,674,975 bp
Genome Size 4,674,975 bp
Protein Count 4,236
Coding Density 85.29%
GC Percentage 63.90%
Ambiguous Bases N/A
GTDB representative GCA_004136375.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM146650v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04287888
Country Cameroon
Date 2015-12-15
Genbank Assembly Accession GCA_001466505.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count 1
CDS Count 4,170
Refseq Category na
Seq Rel Date 2015/12/15
Spanned Gaps 0
Species Taxid 347
SSU Count 2
Submitter University of Florida
Taxid 64187
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None