Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pandoraea; s__Pandoraea apista
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pandoraea; s__Pandoraea apista
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pandoraea; s__Pandoraea apista
NCBI Strain Identifiers DSM 16535
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (20 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.43%
CheckM Contamination 1.54%
CheckM Strain Heterogeneity 57.14
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 2
N50 Contigs 5,493,967 bp
Longest Contig 5,493,967 bp
Scaffold Count 2
N50 Scaffolds 5,493,967 bp
Longest Scaffold 5,493,967 bp
Genome Size 5,571,260 bp
Protein Count 5,024
Coding Density 87.35%
GC Percentage 62.63%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM146559v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04316586
Country Denmark
Date 2016-12-5
Genbank Assembly Accession GCA_001465595.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Sputum (Cystic Fibrosis Patient)
Latitude Longitude None
Molecule Count 2
CDS Count 4,962
Refseq Category na
Seq Rel Date 2016/12/05
Spanned Gaps 0
Species Taxid 93218
SSU Count 4
Submitter University of Malaya
Taxid 93218
Total Gap Length 0
Translation Table 11
tRNA Count (total) 65
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None