Staphylococcus epidermidis
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Staphylococcales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Staphylococcaceae; g__Staphylococcus; s__Staphylococcus epidermidis
NCBI Strain Identifiers SE4.8
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_006742205.1)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.66%
CheckM Strain Heterogeneity 100.0
5S Count 4
16S Count 1
23S Count 2
tRNA Count 19
Contig Count 124
N50 Contigs 48,764 bp
Longest Contig 155,227 bp
Scaffold Count 124
N50 Scaffolds 48,764 bp
Longest Scaffold 155,227 bp
Genome Size 2,484,083 bp
Protein Count 2,352
Coding Density 83.57%
GC Percentage 31.89%
Ambiguous Bases N/A
GTDB representative GCA_006742205.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146539v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03097233
Country India
Date 2015-12-11
Genbank Assembly Accession GCA_001465395.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Rice seed
Latitude Longitude None
Molecule Count N/A
CDS Count 2,418
Refseq Category na
Seq Rel Date 2015/12/11
Spanned Gaps 0
Species Taxid 1282
SSU Count 1
Submitter CSIR-Institute of Microbial Technology
Taxid 1282
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRVQ00000000.1