Rhodococcus pyridinivorans
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Rhodococcus; s__Rhodococcus pyridinivorans
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus pyridinivorans
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus pyridinivorans; x__Rhodococcus pyridinivorans KG-16
NCBI Strain Identifiers KG-16
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900105195.1)
Genome Characteristics
CheckM Completeness 99.81%
CheckM Contamination 0.16%
CheckM Strain Heterogeneity 50.0
5S Count 4
16S Count 1
23S Count 3
tRNA Count 19
Contig Count 87
N50 Contigs 350,796 bp
Longest Contig 1,103,274 bp
Scaffold Count 87
N50 Scaffolds 350,796 bp
Longest Scaffold 1,103,274 bp
Genome Size 5,828,833 bp
Protein Count 5,337
Coding Density 90.65%
GC Percentage 67.69%
Ambiguous Bases N/A
GTDB representative GCA_900105195.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146532v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02486559
Country India: Krishna-Godaveri Basin; Andhara Pradesh
Date 2015-12-11
Genbank Assembly Accession GCA_001465325.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Soil Sample
Latitude Longitude None
Molecule Count N/A
CDS Count 5,244
Refseq Category na
Seq Rel Date 2015/12/11
Spanned Gaps 0
Species Taxid 103816
SSU Count 1
Submitter Centre for Cellular and Molecular Biology (CSIR-CCMB)
Taxid 1441730
Total Gap Length 0
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AZXY00000000.1