Clostridium butyricum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium butyricum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium butyricum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Clostridiaceae; g__Clostridium; s__Clostridium butyricum
NCBI Strain Identifiers JKY6D1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_006742065.1)
Genome Characteristics
CheckM Completeness 99.17%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 9
16S Count 9
23S Count 9
tRNA Count 20
Contig Count 3
N50 Contigs 3,819,894 bp
Longest Contig 3,819,894 bp
Scaffold Count 3
N50 Scaffolds 3,819,894 bp
Longest Scaffold 3,819,894 bp
Genome Size 4,618,327 bp
Protein Count 4,114
Coding Density 84.22%
GC Percentage 28.73%
Ambiguous Bases N/A
GTDB representative GCA_006742065.1
GTDB representative of species False
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM146517v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04285352
Country China: AnHui
Date 2015-12-10
Genbank Assembly Accession GCA_001465175.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source the pit mud of a Chinese liquor factory
Latitude Longitude 31.52 N 117.17 E
Molecule Count 3
CDS Count 4,023
Refseq Category na
Seq Rel Date 2015/12/10
Spanned Gaps 0
Species Taxid 1492
SSU Count 9
Submitter Anhui University
Taxid 1492
Total Gap Length 0
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None