Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 50822286
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.36%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 140
N50 Contigs 135,058 bp
Longest Contig 318,152 bp
Scaffold Count 140
N50 Scaffolds 135,058 bp
Longest Scaffold 318,152 bp
Genome Size 5,104,470 bp
Protein Count 4,960
Coding Density 87.91%
GC Percentage 50.58%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146364v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04158319
Country Norway
Date 2015-12-09
Genbank Assembly Accession GCA_001463645.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Rectal swab
Latitude Longitude None
Molecule Count N/A
CDS Count 5,100
Refseq Category na
Seq Rel Date 2015/12/09
Spanned Gaps 0
Species Taxid 562
SSU Count 4
Submitter Norwegian National Advisory Unit on Detection of Antimicrobial Resistance
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNIK00000000.1