Escherichia coli_D
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 50739467
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 9
16S Count 1
23S Count 5
tRNA Count 20
Contig Count 196
N50 Contigs 146,806 bp
Longest Contig 353,557 bp
Scaffold Count 196
N50 Scaffolds 146,806 bp
Longest Scaffold 353,557 bp
Genome Size 5,298,919 bp
Protein Count 5,076
Coding Density 87.82%
GC Percentage 50.49%
Ambiguous Bases 3
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146358v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04158312
Country Norway
Date 2015-12-09
Genbank Assembly Accession GCA_001463585.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Urine
Latitude Longitude None
Molecule Count N/A
CDS Count 5,284
Refseq Category na
Seq Rel Date 2015/12/09
Spanned Gaps 0
Species Taxid 562
SSU Count 4
Submitter Norwegian National Advisory Unit on Detection of Antimicrobial Resistance
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 89
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNID00000000.1