Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 50673720
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.17%
CheckM Strain Heterogeneity 0.0
5S Count 7
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 156
N50 Contigs 131,195 bp
Longest Contig 361,177 bp
Scaffold Count 156
N50 Scaffolds 131,195 bp
Longest Scaffold 361,177 bp
Genome Size 5,013,159 bp
Protein Count 4,871
Coding Density 87.73%
GC Percentage 50.58%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM146353v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN04158305
Country Norway
Date 2015-12-09
Genbank Assembly Accession GCA_001463535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Rectal swab
Latitude Longitude None
Molecule Count N/A
CDS Count 5,040
Refseq Category na
Seq Rel Date 2015/12/09
Spanned Gaps 0
Species Taxid 562
SSU Count 6
Submitter Norwegian National Advisory Unit on Detection of Antimicrobial Resistance
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 87
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master LNHW00000000.1